生物多样性格局、形成与演化
1. Ryder OA, McLaren A, Brenner S, Zhang YP, Benirschke K. Ecology - DNA banks for endangered animal species. Science, 2000, 288:275-277.
2. Murphy WJ, Eizirik E, Johnson WE, Zhang YP, Ryder OA, O'Brien SJ. Molecular phylogenetics and the origins of placental mammals. Nature, 2001, 409:614-618.
3. Zhang JZ, Zhang YP, Rosenberg HF. Adaptive evolution of a duplicated pancreatic ribonuclease gene in a leaf-eating monkey. Nature Genetics, 2002, 30:411-415.
4. Liu JX#, Gao TX*, Wu SF, Zhang YP*. Pleistocene isolation in the northwestern Pacific marginal seas and limited dispersal in a marine fish, Chelon haematocheilus (Temminck & Schlegel, 1845). Molecular Ecology, 2007, 16:275-288.
5. Shen YY#, Liang L, Zhu ZH, Zhou WP, Irwin DM, Zhang YP*. Adaptive evolution of energy metabolism genes and the origin of flight in bats. Proceedings of the National Academy of Sciences of the United States of America, 2010, 107:8666-8671.
家养动物起源与驯化
1. Savolainen P, Zhang YP, Luo J, Lundeberg J, Leitner T. Genetic evidence for an East Asian origin of domestic dogs. Science, 2002, 298:1610-1613.
2. Pang JF#, Kluetsch C#, Zou XJ#, Zhang AB#, Luo LY, Angleby H, Ardalan A, Ekstrom C, Skollermo A, Lundeberg J, Matsumura S, Leitner T, Zhang YP*, Savolainen P*. mtDNA data indicate a single origin for dogs south of Yangtze River, less than 16,300 years ago, from numerous wolves. Molecular Biology and Evolution, 2009, 26:2849-2864.
3. Wang GD#, Zhai WW#, Yang HC, Fan RX, Cao X, Zhong L, Wang L, Liu F, Wu H, Cheng LG, Poyarkov AD, Poyarkov NA, Tang SS, Zhao WM, Gao Y, Lv XM, Irwin DM, Savolainen P, Wu CI*, Zhang YP*. The genomics of selection in dogs and the parallel evolution between dogs and humans. Nature Communications, 2013, 4: 1860
4. Wang GD#, Zhai WW#, Yang HC#, Wang L#, Zhong L, Liu YH, Fan RX, Yin TT, Zhu CL, Poyarkov AD, Irwin DM, Hytonen MK, Lohi H, Wu CI, Savolainen P*, Zhang YP*. Out of southern East Asia: the natural history of domestic dogs across the world. Cell Research, 2016, 26:21-33.
5. Liu YP#, Wu GS#, Yao YG, Miao YW, Luikart G, Baig M, Beja-Pereira A, Ding ZL, Palanichamy MG, Zhang YP*. Multiple maternal origins of chickens: out of the Asian jungles. Molecular Phylogenetics and Evolution, 2006, 38:12-19.
6. Miao YW#, Peng MS#, Wu GS, Ouyang YN, Yang ZY, Yu N, Liang JP, Pianchou G, Beja-Pereira A, Mitra B, Palanichamy MG, Baig M, Chaudhuri TK, Shen YY, Kong QP, Murphy RW, Yao YG, Zhang YP*. Chicken domestication: an updated perspective based on mitochondrial genomes. Heredity, 2013, 110:277-282.
7. Wang MS#, Thakur M#, Peng MS#, Jiang Y#, Frantz LAF#, Li M, Zhang JJ, Wang S, Peters J, Otecko NO, Suwannapoom C, Guo X, Zheng ZQ, Esmailizadeh A, Hirimuthugoda NY, Ashari H, Suladari S, Zein MSA, Kusza S, Sohrabi S, Kharrati-Koopaee H, Shen QK, Zeng L, Yang MM, Wu YJ, Yang XY, Lu XM, Jia XZ, Nie QH, Lamont SJ, Lasagna E, Ceccobelli S, Gunwardana HGTN, Senasige TM, Feng SH, Si JF, Zhang H, Jin JQ, Li ML, Liu YH, Chen HM, Ma C, Dai SS, Bhuiyan AFH, Khan MS, Silva GLLP, Le TT, Mwai OA, Ibrahim MNM, Supple M, Shapiro B, Hanotte O, Zhang GJ, Larson G, Han JL*, Wu DD*, Zhang YP*. 863 genomes reveal the origin and domestication of chicken. Cell Research, 2020, 38: 693-701.
8. Li J#, Yang H, Li JR, Li HP, Ning T, Pan XR, Shi P*, Zhang YP*. Artificial selection of the melanocortin receptor 1 gene in Chinese domestic pigs during domestication. Heredity, 2010, 105:274-281.
9. Zhou ZY#, Li AM#, Otecko NO, Liu YH, Irwin DM, Wang L, Adeola AC, Zhang JY, Xie HB, Zhang YP*. PigVar: a database of pig variations and positive selection signatures. Database-the Journal of Biological Databases and Curation, 2017, 1-10.
10. Xie HB#*, Wang LG#, Fan CY#, Zhang LC#, Adeola CA, Yin X, Zeng ZB*, Wang LX*, Zhang YP*. Genetic architecture underlying nascent speciation of Eurasian domestic pigs. Molecular Biology and Evolution, 2020, 38:3556-3566
11. Li JB#, Wang LG#, Yu DW#, Hao JF#, Zhang LC#, Adeola CA, Mao BY, Gao Y, Wu SF, Zhu CL,Zhang YQ, Ren JL, Mu CG, David M. Irwin, Wang LX*, Hai T*, Xie HB*, Zhang YP*. Single-cell RNA-sequencing Reveals Thoracolumbar Vertebra Heterogeneity and Rib-genesis in Pigs. Genomics Proteomics & Bioinformatics, 2021, 19:423-436.
12. Xie HB#, Yan C#, Adeola A.C.#, Wang K#, Huang CP#, Xu MM, Qiu Q, Yin X, Fan CY, Ma YF, Yin TT, Gao Y, Deng JK, Okeyoyin A.O., Oluwole O.O., Omotosho O,M.O. Okoro M.O.V, Omitogun G.O., Dawuda P.M., Olaogun S.C., Nneji L.M., Ayoola A.O., Sanke O.J., Luka P.D., Okoth E, Lekolool I, Mijele D, Bishop R.P., Han JL*, Wang W*, Peng MS*, Zhang YP*.African Suid Genomes Provide Insights into the Local Adaptation to Diverse African Environments. Molecular Biology and Evolution, 2022, 39(12):msac256.
人群历史演化
1. Yao YG, Kong QP, Bandelt HJ, Kivisild T, Zhang YP*. Phylogeographic differentiation of mitochondrial DNA in Han Chinese. American Journal of Human Genetics, 2002, 70:635-651.
2. Kong QP#*, Bandelt HJ, Sun C, Yao YG, Salas A, Achilli A, Wang CY, Zhong L, Zhu CL, Wu SF, Torroni A, Zhang YP*. Updating the East Asian mtDNA phylogeny: a prerequisite for the identification of pathogenic mutations. Human Molecular Genetics, 2006, 15:2076-2086.
3. Yang XY#, Allah Rakh#, Chen W, Hou JZ, Qi XB, Shen QK, Dai SS, Sulaiman X, Abdulloevich NT, Afanasevna ME, Ibrohimovich KB, Chen X, Yang WK, Adnan A, Zhao RH, Yao YG, Su B, Peng MS*, Zhang YP*.Tracing the genetic legacy of the Tibetan Empire in the Balti. Molecular Biology and Evolution, 2020,38:1529-1536.
4. Dai SS#, Sulaiman X#, Isakova J#, Xu WF#, Abdulloevich NT, Afanasevna ME, Ibrohimovich KB, Chen X, Yang WK, Wang MS, Shen QK, Yang XY, Yao YG, Aldashev AA, Saidov A, Chen W, Cheng LF*, Peng MS*, Zhang YP*. The genetic echo of the Tarim mummies in modern Central Asians. Molecular Biology and Evolution, 2022,39(9):msac179.
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科研进展报道（部分）
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（http://kiz.cas.cn/xwzx/kydt/202312/t20231206_6906980.html）
2. 青藏高原畜牧业传播中的遗传和文化适应机制
（http://kiz.cas.cn/xwzx/kydt/202310/t20231007_6892044.html）
3. 锐目猎犬的群体历史及其擅长奔跑的遗传机制
（http://kiz.cas.cn/xwzx/kydt/202309/t20230915_6882272.html）
4. HiFi混合测序mtDNA基因组研究表明远离青藏高原地区的藏獒存在基因污染
（https://mp.weixin.qq.com/s/gpq9pU3rNzuCFR6238hfow）
5. 罗伯逊易位在牛属物种形成中的作用
（http://www.kiz.cas.cn/xwzx/kydt/202301/t20230118_6601226.html）
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