封面论著(Selected Covers):

发表文章：

1.    J Stiller, S Feng, A-A Chowdhury, I Rivas-González, DA Duchêne, Q Fang, Y Deng, A Kozlov, A Stamatakis, S Claramunt, JMT Nguyen, SYW Ho, BC Faircloth, J Haag, P Houde, J Cracraft, M Balaban, U Mai, G Chen, R Gao, C Zhou, Y Xie, Z Huang, Z Cao, Z Yan, HA Ogilvie, L Nakhleh, B Lindow, B Morel, J Fjeldså, PA Hosner, RR Da Fonseca, B Petersen, JA Tobias, T Székely, JD Kennedy, AH Reeve, A Liker, M Stervander, A Antunes, DT Tietze, M Bertelsen, F Lei, C Rahbek, GR Graves, MH Schierup, T Warnow, EL Braun, MTP Gilbert, ED Jarvis, S Mirarab and G Zhang. Complexity of avian evolution revealed by family-level genomes. Nature (2024)

2.    S Mirarab, I Rivas-González, S Feng, J Stiller, Q Fang, U Mai, G Hickey, G Chen, N Brajuka, O Fedrigo, G Formenti, JBW Wolf, K Howe, A Antunes, MH Schierup, B Paten, ED Jarvis, G Zhang and EL Braun. A region of suppressed recombination misleads neoavian phylogenomics. Proceedings of the National Academy of Sciences 121, e2319506121. (2024)

3.   Y Xie and G Zhang. Phylogenomic analyses unraveled the evolution of viral tolerance in bats. Cell Genomics 4, (2024)

4.   B Hu, X-L Zhuang, L Zhou, G Zhang, DN Cooper and D-D Wu. Deciphering the Role of Rapidly Evolving Conserved Elements in Primate Brain Development and Exploring Their Potential Involvement in Alzheimer's Disease. Molecular Biology and Evolution 41, msae001. (2024)

5.   LFK Kuderna, JC Ulirsch, S Rashid, M Ameen, L Sundaram, G Hickey, AJ Cox, H Gao, A Kumar, F Aguet, MJ Christmas, H Clawson, M Haeussler, MC Janiak, M Kuhlwilm, JD Orkin, T Bataillon, S Manu, A Valenzuela, J Bergman, M Rouselle, FE Silva, L Agueda, J Blanc, M Gut, D De Vries, I Goodhead, RA Harris, M Raveendran, A Jensen, IS Chuma, JE Horvath, C Hvilsom, D Juan, P Frandsen, JG Schraiber, FR De Melo, F Bertuol, H Byrne, I Sampaio, I Farias, J Valsecchi, M Messias, MNF Da Silva, M Trivedi, R Rossi, T Hrbek, N Andriaholinirina, CJ Rabarivola, A Zaramody, CJ Jolly, J Phillips-Conroy, G Wilkerson, C Abee, JH Simmons, E Fernandez-Duque, S Kanthaswamy, F Shiferaw, D Wu, L Zhou, Y Shao, G Zhang, JD Keyyu, S Knauf, MD Le, E Lizano, S Merker, A Navarro, T Nadler, CC Khor, J Lee, P Tan, WK Lim, AC Kitchener, D Zinner, I Gut, AD Melin, K Guschanski, MH Schierup, RMD Beck, I Karakikes, KC Wang, G Umapathy, C Roos, JP Boubli, A Siepel, A Kundaje, B Paten, K Lindblad-Toh, J Rogers, T Marques Bonet and KK-H Farh. Identification of constrained sequence elements across 239 primate genomes. Nature 625, 735-742. (2024)

6.   G Femerling, C Van Oosterhout, S Feng, RM Bristol, G Zhang, J Groombridge, MT P. Gilbert and HE Morales. Genetic Load and Adaptive Potential of a Recovered Avian Species that Narrowly Avoided Extinction. Molecular Biology and Evolution 40, (2023)

7.   C Yang, Y Zhou, Y Song, D Wu, Y Zeng, L Nie, P Liu, S Zhang, G Chen, J Xu, H Zhou, L Zhou, X Qian, C Liu, S Tan, C Zhou, W Dai, M Xu, Y Qi, X Wang, L Guo, G Fan, A Wang, Y Deng, Y Zhang, J Jin, Y He, C Guo, G Guo, Q Zhou, X Xu, H Yang, J Wang, S Xu, Y Mao, X Jin, J Ruan and G Zhang. The complete and fully-phased diploid genome of a male Han Chinese. Cell Research 33, 745-761. (2023)

8.   PA O'brien, S Tan, PR Frade, SJ Robbins, JP Engelberts, SC Bell, I Vanwonterghem, DJ Miller, NS Webster, G Zhang and DG Bourne. Validation of key sponge symbiont pathways using genome-centric metatranscriptomics. Environmental Microbiology 25, 3207-3224. (2023)

9.   F Sánchez-Barreiro, B De Cahsan, MV Westbury, X Sun, A Margaryan, C Fontsere, MW Bruford, I-RM Russo, DC Kalthoff, T Sicheritz-Pontén, B Petersen, L Dalén, G Zhang, T Marquès-Bonet, MTP Gilbert and Y Moodley. Historic Sampling of a Vanishing Beast: Population Structure and Diversity in the Black Rhinoceros. Molecular Biology and Evolution 40, msad180. (2023)

10. X Zhuang, J Zhang, Y Shao, Y Ye, C Chen, L Zhou, Z Wang, X Luo, B Su, Y Yao, D Cooper, B Hu, L Wang, X Qi, J Lin, G Zhang, W Wang, N Sheng and DD Wu. Integrative omics reveals rapidly evolving regulatory sequences driving primate brain evolution. Molecular Biology and Evolution msad173. (2023)

11. Smith, JM Alfieri, N Anthony, P Arensburger, GN Athrey, J Balacco, A Balic, P Bardou, P Barela, Y Bigot, H Blackmon, PM Borodin, R Carroll, MC Casono, M Charles, H Cheng, M Chiodi, L Cigan, LM Coghill, R Crooijmans, N Das, S Davey, A Davidian, F Degalez, JM Dekkers, M Derks, AB Diack, A Djikeng, Y Drechsler, A Dyomin, O Fedrigo, SR Fiddaman, G Formenti, LaF Frantz, JE Fulton, E Gaginskaya, S Galkina, RA Gallardo, J Geibel, AA Gheyas, CJP Godinez, A Goodell, JaM Graves, DK Griffin, B Haase, J-L Han, O Hanotte, LJ Henderson, Z-C Hou, K Howe, L Huynh, E Ilatsia, ED Jarvis, SM Johnson, J Kaufman, T Kelly, S Kemp, C Kern, JH Keroack, C Klopp, S Lagarrigue, SJ Lamont, M Lange, A Lanke, DM Larkin, G Larson, JKN Layos, O Lebrasseur, LP Malinovskaya, RJ Martin, ML Martin Cerezo, AS Mason, FM Mccarthy, MJ Mcgrew, J Mountcastle, CK Muhonja, W Muir, K Muret, TD Murphy, I Ng’ang’a, M Nishibori, RE O’connor, M Ogugo, R Okimoto, O Ouko, HR Patel, F Perini, MI Pigozzi, KC Potter, PD Price, C Reimer, ES Rice, N Rocos, TF Rogers, P Saelao, J Schauer, RD Schnabel, VA Schneider, H Simianer, A Smith, MP Stevens, K Stiers, CK Tiambo, M Tixier-Boichard, AA Torgasheva, A Tracey, CA Tregaskes, L Vervelde, Y Wang, WC Warren, PD Waters, D Webb, S Weigend, A Wolc, AE Wright, D Wright, Z Wu, M Yamagata, C Yang, Z-T Yin, MC Young, G Zhang, B Zhao and H Zhou. Fourth Report on Chicken Genes and Chromosomes 2022. Cytogenetic and Genome Research 162, 405-528. (2023)

12. Y Guo, Y Shao, X Bi, B Zhang, H Wu, Y Zhou, M Li, L Yu, G Zhang, D Wu and X Qi. Harvesting the fruits of the first stage of the Primate Genome Project. Zoological Research 44, 725. (2023)

13.  Y Zhou, X Zhan, J Jin, L Zhou, J Bergman, X Li, MMC Rousselle, MR Belles, L Zhao, M Fang, J Chen, Q Fang, L Kuderna, T Marques-Bonet, H Kitayama, T Hayakawa, Y-G Yao, H Yang, DN Cooper, X Qi, D-D Wu, MH Schierup and G Zhang. Eighty million years of rapid evolution of the primate Y chromosome. Nature Ecology & Evolution 7, 1114-1130. (2023)

14.  B Zhang, W Chen, Z Wang, W Pang, M Luo, S Wang, Y Shao, W He, Y Deng, L Zhou, J Chen, M Yang, Y Wu, L Wang, H Fernández-Bellon, S Molloy, H Meunier, F Wanert, L Kuderna, T Marques-Bonet, C Roos, X Qi, M Li, Z Liu, MH Schierup, D Cooper, J Liu, Y Zheng, G Zhang and D Wu. Comparative genomics reveals the hybrid origin of a macaque group. Science Advances 9, eadd3580. (2023)

15.  X Bi, L Zhou, J Zhang, S Feng, M Hu, D Cooper, J Lin, J Li, D Wu and G Zhang. Lineage-specific accelerated sequences underlying primate evolution. Science Advances 9, eadc9507. (2023)

16.  Y Shao, L Zhou, F Li, L Zhao, B-L Zhang, F Shao, J-W Chen, C-Y Chen, X Bi, X-L Zhuang, H-L Zhu, J Hu, Z Sun, X Li, D Wang, I Rivas-González, S Wang, Y-M Wang, W Chen, G Li, H-M Lu, Y Liu, LFK Kuderna, KK-H Farh, P-F Fan, L Yu, M Li, Z-J Liu, GP Tiley, AD Yoder, C Roos, T Hayakawa, T Marques-Bonet, J Rogers, PD Stenson, DN Cooper, MH Schierup, Y-G Yao, Y-P Zhang, W Wang, X-G Qi, G Zhang and D-D Wu. Phylogenomic analyses provide insights into primate evolution. Science 380, 913-924. (2023)

17.  I Rivas-González, M Rousselle, F Li, L Zhou, JY Dutheil, K Munch, Y Shao, D Wu, MH Schierup and G Zhang. Pervasive incomplete lineage sorting illuminates speciation and selection in primates. Science 380, eabn4409. (2023)

18.  H Gao, T Hamp, J Ede, JG Schraiber, J Mcrae, M Singer-Berk, Y Yang, ASD Dietrich, PP Fiziev, LFK Kuderna, L Sundaram, Y Wu, A Adhikari, Y Field, C Chen, S Batzoglou, F Aguet, G Lemire, R Reimers, D Balick, MC Janiak, M Kuhlwilm, JD Orkin, S Manu, A Valenzuela, J Bergman, M Rousselle, FE Silva, L Agueda, J Blanc, M Gut, D De Vries, I Goodhead, RA Harris, M Raveendran, A Jensen, IS Chuma, JE Horvath, C Hvilsom, D Juan, P Frandsen, FR De Melo, F Bertuol, H Byrne, I Sampaio, I Farias, JV Do Amaral, M Messias, MNF Da Silva, M Trivedi, R Rossi, T Hrbek, N Andriaholinirina, CJ Rabarivola, A Zaramody, CJ Jolly, J Phillips-Conroy, G Wilkerson, C Abee, JH Simmons, E Fernandez-Duque, S Kanthaswamy, F Shiferaw, D Wu, L Zhou, Y Shao, G Zhang, JD Keyyu, S Knauf, MD Le, E Lizano, S Merker, A Navarro, T Bataillon, T Nadler, CC Khor, J Lee, P Tan, WK Lim, AC Kitchener, D Zinner, I Gut, A Melin, K Guschanski, MH Schierup, RMD Beck, G Umapathy, C Roos, JP Boubli, M Lek, S Sunyaev, A O’donnell-Luria, HL Rehm, J Xu, J Rogers, T Marques-Bonet and KK-H Farh. The landscape of tolerated genetic variation in humans and primates. Science 380, eabn8153. (2023)

19.  LFK Kuderna, H Gao, MC Janiak, M Kuhlwilm, JD Orkin, T Bataillon, S Manu, A Valenzuela, J Bergman, M Rousselle, FE Silva, L Agueda, J Blanc, M Gut, D De Vries, I Goodhead, RA Harris, M Raveendran, A Jensen, IS Chuma, JE Horvath, C Hvilsom, D Juan, P Frandsen, JG Schraiber, FR De Melo, F Bertuol, H Byrne, I Sampaio, I Farias, J Valsecchi, M Messias, MNF Da Silva, M Trivedi, R Rossi, T Hrbek, N Andriaholinirina, CJ Rabarivola, A Zaramody, CJ Jolly, J Phillips-Conroy, G Wilkerson, C Abee, JH Simmons, E Fernandez-Duque, S Kanthaswamy, F Shiferaw, D Wu, L Zhou, Y Shao, G Zhang, JD Keyyu, S Knauf, MD Le, E Lizano, S Merker, A Navarro, T Nadler, CC Khor, J Lee, P Tan, WK Lim, AC Kitchener, D Zinner, I Gut, AD Melin, K Guschanski, MH Schierup, RMD Beck, G Umapathy, C Roos, JP Boubli, J Rogers, KK-H Farh and T Marques Bonet. A global catalog of whole-genome diversity from 233 primate species. Science 380, 906-913. (2023)

20.  X Qi, J Wu, L Zhao, L Wang, X Guang, PA Garber, C Opie, Y Yuan, R Diao, G Li, K Wang, R Pan, W Ji, H Sun, Z Huang, C Xu, AB Witarto, R Jia, C Zhang, C Deng, Q Qiu, G Zhang, C Grueter, D Wu and B Li. Adaptations to a cold climate promoted social evolution in Asian colobine primates. Science 380, eabl8621. (2023)

21.  K Theissinger, C Fernandes, G Formenti, I Bista, PR Berg, C Bleidorn, A Bombarely, A Crottini, GR Gallo, JA Godoy, S Jentoft, J Malukiewicz, A Mouton, RA Oomen, S Paez, PJ Palsbøll, C Pampoulie, MJ Ruiz-López, S Secomandi, H Svardal, C Theofanopoulou, J De Vries, A-M Waldvogel, G Zhang, ED Jarvis, M Bálint, C Ciofi, RM Waterhouse, CJ Mazzoni, J Höglund, SA Aghayan, TS Alioto, I Almudi, N Alvarez, PC Alves, IR Amorim Do Rosario, A Antunes, P Arribas, P Baldrian, G Bertorelle, A Böhne, A Bonisoli-Alquati, LL Boštjančić, B Boussau, CM Breton, E Buzan, PF Campos, C Carreras, LFC Castro, LJ Chueca, F Čiampor, E Conti, R Cook-Deegan, D Croll, MV Cunha, F Delsuc, AB Dennis, D Dimitrov, R Faria, A Favre, OD Fedrigo, R Fernández, GF Ficetola, J-F Flot, T Gabaldón, DR Agius, AM Giani, MTP Gilbert, T Grebenc, K Guschanski, R Guyot, B Hausdorf, O Hawlitschek, PD Heintzman, B Heinze, M Hiller, M Husemann, A Iannucci, I Irisarri, KS Jakobsen, P Klinga, A Kloch, CF Kratochwil, H Kusche, KKS Layton, JA Leonard, E Lerat, G Liti, T Manousaki, T Marques-Bonet, P Matos-Maraví, M Matschiner, F Maumus, AM Mc Cartney, S Meiri, J Melo-Ferreira, X Mengual, MT Monaghan, M Montagna, RW Mysłajek, MT Neiber, V Nicolas, M Novo, P Ozretić, F Palero, L Pârvulescu, M Pascual, OS Paulo, M Pavlek, C Pegueroles, L Pellissier, G Pesole, CR Primmer, A Riesgo, L Rüber, D Rubolini, D Salvi, O Seehausen, M Seidel, B Studer, S Theodoridis, M Thines, L Urban, A Vasemägi, A Vella, N Vella, SC Vernes, C Vernesi, DR Vieites, CW Wheat, G Wörheide, Y Wurm and G Zammit. How genomics can help biodiversity conservation. Trends in Genetics 39, 545-559. (2023)

22.  L Silva, T Mendes, L Ramos, G Zhang and A Antunes. Parallel evolution of fish bi-modal breathing and expansion of olfactory receptor (OR) genes: toward a universal ORs nomenclature. Journal of Genetics and Genomics (2023)

23.  C Shao, S Sun, K Liu, J Wang, S Li, Q Liu, BE Deagle, I Seim, A Biscontin, Q Wang, X Liu, S Kawaguchi, Y Liu, S Jarman, Y Wang, H-Y Wang, G Huang, J Hu, B Feng, C De Pittà, S Liu, R Wang, K Ma, Y Ying, G Sales, T Sun, X Wang, Y Zhang, Y Zhao, S Pan, X Hao, Y Wang, J Xu, B Yue, Y Sun, H Zhang, M Xu, Y Liu, X Jia, J Zhu, S Liu, J Ruan, G Zhang, H Yang, X Xu, J Wang, X Zhao, B Meyer and G Fan. The enormous repetitive Antarctic krill genome reveals environmental adaptations and population insights. Cell 186, 1279-1294.e1219. (2023)

24.  LA Bergeron, S Besenbacher, J Zheng, P Li, MF Bertelsen, B Quintard, JI Hoffman, Z Li, J St. Leger, C Shao, J Stiller, MTP Gilbert, MH Schierup and G Zhang. Evolution of the germline mutation rate across vertebrates. Nature 615, 285-291. (2023)

25.  P Zhang, Y Zhu, Q Guo, J Li, X Zhan, H Yu, N Xie, H Tan, N Lundholm, L Garcia-Cuetos, MD Martin, MA Subirats, Y-H Su, I Ruiz-Trillo, MQ Martindale, J-K Yu, MTP Gilbert, G Zhang and Q Li. On the origin and evolution of RNA editing in metazoans. Cell Reports 42, 112112. (2023)

26.  RR Germain, S Feng, G Chen, GR Graves, JA Tobias, C Rahbek, F Lei, J Fjeldså, PA Hosner, MTP Gilbert, G Zhang and D Nogués-Bravo. Species-specific traits mediate avian demographic responses under past climate change. Nature Ecology & Evolution 7, 862-872. (2023)

27.  RR Germain, S Feng, L Buffan, CP Carmona, G Chen, GR Graves, JA Tobias, C Rahbek, F Lei, J Fjeldså, PA Hosner, MTP Gilbert, G Zhang and D Nogués-Bravo. Changes in the functional diversity of modern bird species over the last million years. Proceedings of the National Academy of Sciences 120, e2201945119. (2023)

28.  K Wanders, G Chen, S Feng, G Zhang, T Székely, M Bruford, Z Végvári, G Eichhorn and A Urrutia. Polygamy and purifying selection in birds. Evolution 77, 276-288. (2023)

29.  G Zhang. The mutation rate as an evolving trait. Nature Reviews Genetics 24, 3-3. (2023)

30.  DD Wu, XG Qi, L Yu, M Li, ZJ Liu, AD Yoder, C Roos, T Hayakawa, J Rogers, T Marques-Bonet, B Su, YG Yao, YP Zhang and G Zhang. Initiation of the Primate Genome Project. Zoological Research 43, 147-149. (2022)

31.  Z Wang, J Zhang, X Xu, C Witt, Y Deng, G Chen, G Meng, S Feng, L Xu, T Szekely, G Zhang and Q Zhou. Phylogeny and sex chromosome evolution of Palaeognathae. Journal of Genetics and Genomics 49, 109-119. (2022)

32.  H Toh, C Yang, G Formenti, K Raja, L Yan, A Tracey, W Chow, K Howe, LA Bergeron, G Zhang, B Haase, J Mountcastle, O Fedrigo, J Fogg, B Kirilenko, C Munegowda, M Hiller, A Jain, D Kihara, A Rhie, AM Phillippy, SA Swanson, P Jiang, DO Clegg, ED Jarvis, JA Thomson, R Stewart, MJP Chaisson and YV Bukhman. A haplotype-resolved genome assembly of the Nile rat facilitates exploration of the genetic basis of diabetes. BMC Biology 20, 245. (2022)

33.  B Qiu, X Dai, P Li, RS Larsen, R Li, AL Price, G Ding, MJ Texada, X Zhang, D Zuo, Q Gao, W Jiang, T Wen, L Pontieri, C Guo, K Rewitz, Q Li, W Liu, JJ Boomsma and G Zhang. Canalized gene expression during development mediates caste differentiation in ants. Nature Ecology & Evolution 6, 1753-1765. (2022)

34.  Y Mao and G Zhang. A complete, telomere-to-telomere human genome sequence presents new opportunities for evolutionary genomics. Nature Methods 19, 635-638. (2022)

35.  J Lin, D Duchêne, C Carøe, O Smith, MM Ciucani, J Niemann, D Richmond, AD Greenwood, R Macphee, G Zhang, S Gopalakrishnan and MTP Gilbert. Probing the genomic limits of de-extinction in the Christmas Island rat. Current Biology 32, 1650-1656.e1653. (2022)

36.  Y Li, G Zhang and J Cui. Origin and Deep Evolution of Human Endogenous Retroviruses in Pan-Primates. Viruses 14, 7. (2022)

37.  X Li, R Gao, G Chen, AL Price, DB Øksnebjerg, PA Hosner, Y Zhou, G Zhang and S Feng. Draft genome assemblies of four manakins. Scientific Data 9, 564. (2022)

38.  Q Li, M Wang, P Zhang, Y Liu, Q Guo, Y Zhu, T Wen, X Dai, X Zhang, M Nagel, BH Dethlefsen, N Xie, J Zhao, W Jiang, L Han, L Wu, W Zhong, Z Wang, X Wei, W Dai, L Liu, X Xu, H Lu, H Yang, J Wang, JJ Boomsma, C Liu, G Zhang and W Liu. A single-cell transcriptomic atlas tracking the neural basis of division of labour in an ant superorganism. Nature Ecology & Evolution 6, 1191-1204. (2022)

39.  F Li, RV Rane, V Luria, Z Xiong, J Chen, Z Li, RA Catullo, PC Griffin, M Schiffer, S Pearce, SF Lee, K Mcelroy, A Stocker, J Shirriffs, F Cockerell, C Coppin, CM Sgrò, A Karger, JW Cain, JA Weber, G Santpere, MW Kirschner, AA Hoffmann, JG Oakeshott and G Zhang. Phylogenomic analyses of the genus Drosophila reveals genomic signals of climate adaptation. Molecular Ecology Resources 22, 1559-1581. (2022)

40.  HA Lewin, S Richards, E Lieberman Aiden, ML Allende, JM Archibald, M Bálint, KB Barker, B Baumgartner, K Belov, G Bertorelle, ML Blaxter, J Cai, ND Caperello, K Carlson, JC Castilla-Rubio, S-M Chaw, L Chen, AK Childers, JA Coddington, DA Conde, M Corominas, KA Crandall, AJ Crawford, F Dipalma, R Durbin, TE Ebenezer, SV Edwards, O Fedrigo, P Flicek, G Formenti, RA Gibbs, MTP Gilbert, MM Goldstein, JM Graves, HT Greely, IV Grigoriev, KJ Hackett, N Hall, D Haussler, KM Helgen, CJ Hogg, S Isobe, KS Jakobsen, A Janke, ED Jarvis, WE Johnson, SJM Jones, EK Karlsson, PJ Kersey, J-H Kim, WJ Kress, S Kuraku, MKN Lawniczak, JH Leebens-Mack, X Li, K Lindblad-Toh, X Liu, JV Lopez, T Marques-Bonet, S Mazard, JaK Mazet, CJ Mazzoni, EW Myers, RJ O’neill, S Paez, H Park, GE Robinson, C Roquet, OA Ryder, JSM Sabir, HB Shaffer, TM Shank, JS Sherkow, PS Soltis, B Tang, L Tedersoo, M Uliano-Silva, K Wang, X Wei, R Wetzer, JL Wilson, X Xu, H Yang, AD Yoder and G Zhang. The Earth BioGenome Project 2020: Starting the clock. Proceedings of the National Academy of Sciences 119, e2115635118. (2022)

41.  MKN Lawniczak, R Durbin, P Flicek, K Lindblad-Toh, X Wei, JM Archibald, WJ Baker, K Belov, ML Blaxter, T Marques Bonet, AK Childers, JA Coddington, KA Crandall, AJ Crawford, RP Davey, F Di Palma, Q Fang, W Haerty, N Hall, KJ Hoff, K Howe, ED Jarvis, WE Johnson, RN Johnson, PJ Kersey, X Liu, JV Lopez, EW Myers, OV Pettersson, AM Phillippy, MF Poelchau, KD Pruitt, A Rhie, JC Castilla-Rubio, SK Sahu, NA Salmon, PS Soltis, D Swarbreck, F Thibaud-Nissen, S Wang, JL Wegrzyn, G Zhang, H Zhang, HA Lewin and S Richards. Standards recommendations for the Earth BioGenome Project. Proceedings of the National Academy of Sciences 119, e2115639118. (2022)

42.  J Kim, C Lee, BJ Ko, DA Yoo, S Won, AM Phillippy, O Fedrigo, G Zhang, K Howe, J Wood, R Durbin, G Formenti, S Brown, L Cantin, CV Mello, S Cho, A Rhie, H Kim and ED Jarvis. False gene and chromosome losses in genome assemblies caused by GC content variation and repeats. Genome Biology 23, 204. (2022)

43.  Y Ji, S Feng, L Wu, Q Fang, A Brüniche-Olsen, JA Dewoody, Y Cheng, D Zhang, Y Hao, G Song, Y Qu, A Suh, G Zhang, SJ Hackett and F Lei. Orthologous microsatellites, transposable elements, and DNA deletions correlate with generation time and body mass in neoavian birds. Science Advances 8, eabo0099. (2022)

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93.  E Lord, N Dussex, M Kierczak, D Díez-Del-Molino, OA Ryder, DWG Stanton, MTP Gilbert, F Sánchez-Barreiro, G Zhang, M-HS Sinding, ED Lorenzen, E Willerslev, A Protopopov, F Shidlovskiy, S Fedorov, H Bocherens, SKSS Nathan, B Goossens, J Van Der Plicht, YL Chan, S Prost, O Potapova, I Kirillova, AM Lister, PD Heintzman, JD Kapp, B Shapiro, S Vartanyan, A Götherström and L Dalén. Pre-extinction Demographic Stability and Genomic Signatures of Adaptation in the Woolly Rhinoceros. Current Biology 30, 3871-3879.e3877. (2020)

94.  Q Li, Q Guo, Y Zhou, H Tan, T Bertozzi, Y Zhu, J Li, S Donnellan and G Zhang. Repetitive element annotation protocol for the eastern banjo frog. protocols. io (2020)

95.  Q Li, Q Guo, Y Zhou, H Tan, T Bertozzi, Y Zhu, J Li, S Donnellan and G Zhang. Construction and sequencing of DNA libraries on Hiseq 2000 platform for the eastern banjo frog. protocols. io (2020)

96.  Q Li, Q Guo, Y Zhou, H Tan, T Bertozzi, Y Zhu, J Li, S Donnellan and G Zhang. Repetitive element annotation for the eastern banjo frog genome assembly V. 3. protocols. io (2020)

97.  KM Kapheim, BM Jones, H Pan, C Li, BA Harpur, CF Kent, A Zayed, P Ioannidis, RM Waterhouse, C Kingwell, E Stolle, A Avalos, G Zhang, WO Mcmillan and WT Wcislo. Developmental plasticity shapes social traits and selection in a facultatively eusocial bee. Proceedings of the National Academy of Sciences 117, 13615-13625. (2020)

98.  J Howe, M Schiøtt, Q Li, Z Wang, G Zhang and JJ Boomsma. A novel method for using RNA-seq data to identify imprinted genes in social Hymenoptera with multiply mated queens. Journal of Evolutionary Biology 33, 1770-1782. (2020)

99.  P Gelabert, M Sandoval-Velasco, A Serres, M De Manuel, P Renom, A Margaryan, J Stiller, T De-Dios, Q Fang, S Feng, S Mañosa, G Pacheco, M Ferrando-Bernal, G Shi, F Hao, X Chen, B Petersen, R-A Olsen, A Navarro, Y Deng, L Dalén, T Marquès-Bonet, G Zhang, A Antunes, MTP Gilbert and C Lalueza-Fox. Evolutionary History, Genomic Adaptation to Toxic Diet, and Extinction of the Carolina Parakeet. Current Biology 30, 108-114.e105. (2020)

100.  Q Gao, Z Xiong, RS Larsen, L Zhou, J Zhao, G Ding, R Zhao, C Liu, H Ran and G Zhang. High-quality chromosome-level genome assembly and full-length transcriptome analysis of the pharaoh ant Monomorium pharaonis. GigaScience 9, giaa143. (2020)

101.  AK Fotakis, SD Denham, M Mackie, MI Orbegozo, D Mylopotamitaki, S Gopalakrishnan, T Sicheritz-Pontén, JV Olsen, E Cappellini, G Zhang, A Christophersen, MTP Gilbert and ÅJ Vågene. Multi-omic detection of Mycobacterium leprae in archaeological human dental calculus. Philosophical Transactions of the Royal Society B: Biological Sciences 375, 20190584. (2020)

102.  AMH Eriksen, H Matthiesen, I Kontopoulos, D Gregory, C Snoeck, G Zhang, MJ Collins and MTP Gilbert. Rapid loss of endogenous DNA in pig bone buried in five different environments. Archaeometry 62, 827-846. (2020)

103.  M De Manuel, R Barnett, M Sandoval-Velasco, N Yamaguchi, F Garrett Vieira, ML Zepeda Mendoza, S Liu, MD Martin, M-HS Sinding, SST Mak, C Carøe, S Liu, C Guo, J Zheng, G Zazula, G Baryshnikov, E Eizirik, K-P Koepfli, WE Johnson, A Antunes, T Sicheritz-Ponten, S Gopalakrishnan, G Larson, H Yang, SJ O’brien, AJ Hansen, G Zhang, T Marques-Bonet and MTP Gilbert. The evolutionary history of extinct and living lions. Proceedings of the National Academy of Sciences 117, 10927-10934. (2020)

104.  RR Da fonseca, A Couto, AM Machado, B Brejova, CB Albertin, F Silva, P Gardner, T Baril, A Hayward, A Campos, ÂM Ribeiro, I Barrio-Hernandez, H-J Hoving, R Tafur-Jimenez, C Chu, B Frazão, B Petersen, F Peñaloza, F Musacchia, GC Alexander, Jr., H Osório, I Winkelmann, O Simakov, S Rasmussen, MZ Rahman, D Pisani, J Vinther, E Jarvis, G Zhang, JM Strugnell, LFC Castro, O Fedrigo, M Patricio, Q Li, S Rocha, A Antunes, Y Wu, B Ma, R Sanges, T Vinar, B Blagoev, T Sicheritz-Ponten, R Nielsen and MTP Gilbert. A draft genome sequence of the elusive giant squid, Architeuthis dux. GigaScience 9, giz152. (2020)

105.  R Barnett, MV Westbury, M Sandoval-Velasco, FG Vieira, S Jeon, G Zazula, MD Martin, SYW Ho, N Mather, S Gopalakrishnan, J Ramos-Madrigal, M De Manuel, ML Zepeda-Mendoza, A Antunes, AC Baez, B De Cahsan, G Larson, SJ O’brien, E Eizirik, WE Johnson, K-P Koepfli, A Wilting, J Fickel, L Dalén, ED Lorenzen, T Marques-Bonet, AJ Hansen, G Zhang, J Bhak, N Yamaguchi and MTP Gilbert. Genomic Adaptations and Evolutionary History of the Extinct Scimitar-Toothed Cat, Homotherium latidens. Current Biology 30, 5018-5025.e5015. (2020)

106.  A Avalos, M Fang, H Pan, A Ramirez Lluch, AE Lipka, SD Zhao, T Giray, GE Robinson, G Zhang and ME Hudson. Genomic regions influencing aggressive behavior in honey bees are defined by colony allele frequencies. Proceedings of the National Academy of Sciences 117, 17135-17141. (2020)

107.  J Armstrong, G Hickey, M Diekhans, IT Fiddes, AM Novak, A Deran, Q Fang, D Xie, S Feng, J Stiller, D Genereux, J Johnson, VD Marinescu, J Alföldi, RS Harris, K Lindblad-Toh, D Haussler, E Karlsson, ED Jarvis, G Zhang and B Paten. Progressive Cactus is a multiple-genome aligner for the thousand-genome era. Nature 587, 246-251. (2020)

108.  L Xu, G Auer, V Peona, A Suh, Y Deng, S Feng, G Zhang, MPK Blom, L Christidis, S Prost, M Irestedt and Q Zhou. Dynamic evolutionary history and gene content of sex chromosomes across diverse songbirds. Nature Ecology & Evolution 3, 834-844. (2019)

109.  Y Wang, C Zhang, N Wang, Z Li, R Heller, R Liu, Y Zhao, J Han, X Pan, Z Zheng, X Dai, C Chen, M Dou, S Peng, X Chen, J Liu, M Li, K Wang, C Liu, Z Lin, L Chen, F Hao, W Zhu, C Song, C Zhao, C Zheng, J Wang, S Hu, C Li, H Yang, L Jiang, G Li, M Liu, TS Sonstegard, G Zhang, Y Jiang, W Wang and Q Qiu. Genetic basis of ruminant headgear and rapid antler regeneration. Science 364, eaav6335. (2019)

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112.  RV Rane, DF Clarke, SL Pearce, G Zhang, AA Hoffmann and JG Oakeshott. Detoxification Genes Differ Between Cactus-, Fruit-, and Flower-Feeding Drosophila. Journal of Heredity 110, 80-91. (2019)

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119.  M Farré, Q Li, Y Zhou, J Damas, LG Chemnick, J Kim, OA Ryder, J Ma, G Zhang, DM Larkin and HA Lewin. A near-chromosome-scale genome assembly of the gemsbok (Oryx gazella): an iconic antelope of the Kalahari desert. GigaScience 8, giy162. (2019)

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