2022:

1． Qi Long^#, Kai Yan^#, Chendong Wang, Yanling Wen, Furong Qi, Hui Wang, Peng Shi, Xingguo Liu, Wai Yee Chan, Xuemei Lu*, and Hui Zhao*.Modification of Maternally Defined H3K4me3 Regulates the Inviability of Interspecific Xenopus Hybrids. Science Advances (under review)

2． Yanan Cao, Lingling, Chen, Hua Chen…… Xuemei Lu……Yaping Zhang. Was Wuhan the early epicenter of the COVID-19 pandemic? – A critique. National Science Review (Accepted) 

3． Yongsen Ruan, Haijun Wen, Mei Hou, Weiwei Zhai, Shuhua Xu, Xuemei Lu*. On the epicenter of COVID-19 and the origin of the pandemic strain. National Science Review (Accepted)

4． Guanghao Li#, Zuyu Yang#, Dafei Wu, Sixue Liu, Xuening Li, Tao Li, Yawei Li, Liji Liang, Weilong Zou, Chung-I Wu, Hurng-Yi Wang*, Xuemei Lu*. Evolution under spatially heterogeneous selection in solid tumors. Molecular Biology and Evolution, 2022 Jan 7;39(1):msab335.

2021:

1． Chunyan Li^#, Melisa Olave^#, Yali Hou^#, Geng Qin#, Ralf F. Schneider, Zexia Gao, Xiaolong Tu, Xin Wang, Furong Qi, Alexander Nater, Andreas F. Kautt, Shiming Wan, Yanhong Zhang, Yali Liu, Huixian Zhang, Bo Zhang, Hao Zhang, Meng Qu, Shuaishuai Liu,Zeyu Chen,Jia Zhong,He Zhang ,Lingfeng Meng, Kai Wang, Jianping Yin, Liangmin Huang, Byrappa Venkatesh*, Axel Meyer*, Xuemei Lu*, Qiang Lin*. Genome sequences reveal global dispersal routes and suggest convergent genetic adaptations in seahorse evolution. Nature Communications, 2021 Feb 17;12(1):1094.

2． Xiaolu Tang^#, Ruochen Ying^#, Xinmin Yao^#, Guanghao Li, Changcheng Wu, Yiyuli Tang, Zhida Li, Bishan Kuang, Feng Wu, Changsheng Chi, Xiaoman Du, Yi Qin, Shenghan Gao, Songnian Hu, Juncai Ma,Tiangang Liu, Xinghuo Pang, Jianwei Wang, Guoping Zhao, Wenjie Tan*, Yaping Zhang*, Xuemei Lu*, Jian Lu* Evolutionary analysis and lineage designation of SARS-CoV-2 genomes. Science Bulletin, 2021 Nov 30;66(22):2297-2311.

3． Ming-Shan Wang^#, Jin-Jin Zhang^#, Xing Guo^#, Ming Li^#, Rachel Meyer^#, Hidayat Ashari^#,Zhu-Qing Zheng, Sheng Wang,Min-Sheng Peng, Yu Jiang, Mukesh Thakur, Chatmongkon Suwannapoom, Ali Esmailizadeh, Nalini Yasoda Hirimuthugoda, Moch Syamsul Arifin Zein, Szilvia Kusza, Hamed Kharrati-Koopaee, Lin Zeng, Yun-Mei Wang,Ting-Ting Yin, Min-Min Yang, Ming-Li Li, Xuemei Lu, Emiliano Lasagna, Simone Ceccobelli,Humpita Gamaralalage Thilini Nisanka Gunwardana, Thilina Madusanka Senasig, Shao-Hong Feng,Hao Zhang, Abul Kashem Fazlul Haque Bhuiyan, Muhammad Sajjad Khan,Gamamada Liyanage Lalanie Pradeepa Silva, Le Thi Thuy, Okeyo A. Mwai,Mohamed Nawaz Mohamed Ibrahim, Guojie Zhang, Kai-Xing Qu, Olivier Hanotte, Beth Shapiro,Mirte Bosse*, Dong-Dong Wu*, Jian-Lin Han* and Ya-Ping Zhang*.Large-scale genomic analysis reveals the genetic cost of chicken domestication. BMC Biology, 2021 Jun 16;19(1):118.

2020:

1． Yongsen Ruan, Zhida Luo, Xiaolu Tang, Guanghao Li, Haijun Wen, Xionglei He, Xuemei Lu*, Jian Lu*, Chung-I Wu*. On the founder effect in COVID-19 outbreaks – How many infected travelers may have started them all? National Science Review, 2020 Sep 24;8(1):nwaa246.

2． Liduo Yin, Sharmi Banerjee, JiayiFan, Jianlin He , Xuemei Lu*, HehuangXie*. Epigenetic regulation of neuronal cell specification inferred with single cell "Omics" data. Computational and Structural Biotechnology Journal, 2020 Apr 10;18:942-952.

3． Tao Li^#, Xiaolu Tang, Changcheng Wu, Xinmin Yao, Yirong Wang,  Xuemei Lu* and Jian Lu *.The use of SARS-CoV-2-related coronaviruses from bats and pangolins to polarize mutations in SARS-Cov-2. Science China_Life Sciences, 2020 Oct;63(10):1608-1611.

4． Fuqiang Ma^#, Guang-An Lu^#, Qingjian Chen, Yongsen Ruan, Xin Li, Xuemei Lu*, Chunyan Li* Dynamic global analysis of transcription reveals the role of miRNAs in synergistic stabilization of gene expression. Science Bulletin, 2020Dec 30,65(24) 2130-2140

5． Jing Luo^#, Jing Chai ^#, Yanling Wen ^#, Min  Tao ^#, Guoliang Lin ^#, Xiaochuan Liu, Ren Li, Zeyu Chen, Shigang Wu, Shengnan Li, Yude Wang, Qinbo Qin, Shi Wang, Yun Gao, Feng Huang, Lu Wang, Cheng Ai, Xiaobo Wang, Lianwei Li, Chengxi Ye, Huimin Yang, Mi Luo, Jie Chen, Hong Hu, Liujiao Yuan, Li Zhong, Jing Wang, Jian Xu, Zhenglin Du, Zhanshan Ma (Sam), Robert W. Murphy, Axel Meyer, Jianfang Gui, Peng Xu *, Jue Ruan *, Z. Jeffrey Chen *, Shaojun Liu *, Xuemei* Lu, Yaping Zhang*. From asymmetrical to balanced genomic diversification during rediploidization: Subgenomic evolution in allotetraploid fish. Science Advances, 2020 May 27;6(22): eaaz7677.

6． Qingyun Liu^#, Jianhao Wei^#, Yawei Li^#, Mei Wang, Jun Su, Yonghui Lu, Mariana G. López, Xueqin Qian, Zhaoqin Zhu, Haiying Wang, Mingyun Gan, Qi Jiang, Yun-Xin Fu, Howard E. Takiff, I？aki Comas, Feng Li*, Xuemei Lu*, Sarah M. Fortune*, Qian Gao*. Mycobacterium tuberculosis clinical isolates carry mutational signatures of host immune environments. Science Advances ,2020 May 27;6(22): eaaz7677. 

7． Tao Li^#, Jialin Liu^#, Jing Feng^#, Zhenzhen Liu, Sixue Liu, Minjie Zhang, Yuezheng Zhang, Yali Hou, Dafei Wu, Chunyan Li, Young-Bin Chen, Hua Chen, Xuemei Lu*. Variation in the life history strategy underlies functional diversity of tumors. National Science Review, 2020 Jun 5;8(2): nwaa124. 

8． Yali Hou^#*, Furong Qi^#, Xue Bai^#, Tong Ren, Xu Shen, Qin Chu, Xiquan Zhang*, Xuemei Lu* Genome-wide analysis reveals molecular convergence underlying domestication in 7 bird and mammals. BMC Genomics, 2020 Mar 4;21(1):204. 

2019:

1． Yuezheng Zhang^#, Yawei Li^#, Tao Li^#, Xu Shen^#, Tianqi Zhu, Yong Tao, Xueying Li, Di Wang, Qin Ma, Zheng Hu, Jialin Liu, Jue Ruan, Jun Cai, Hurng-Yi Wang*, Xuemei Lu*.Genetic Load and Potential Mutational Meltdown in Cancer Cell Populations. Molecular Biology and Evolution, 2019 Mar 1;36(3):541-552. 

2． Liduo Yin^#, Yanting Luo^#,Xiguang Xu, Shiyu Wen, Xiaowei Wu, Xuemei Lu*, Hehuang Xie*.Virtual methylome dissection facilitated by single-cell analyses. Epigenetics Chromatin, 2019 Nov 11;12(1):66. 

3． Ying Xiang, Kai Yan, Qian Zheng, Haiqiang Ke, Jie Cheng, Wenjun Xiong, Xin Shi, Lei Wei, Min Zhao, Fei Yang, Ping Wang, Xing Lu, Li Fu, Xuemei Lu*, Feng Li*. Histone Demethylase KDM4B Promotes DNA Damage by Activating Long Interspersed Nuclear Element-1. Cancer Research, 2019 Jan 1;79(1):86-98.

4． Furong Qi，Airong Yang，Sadaf Ambreen, Xue Bai, Yali Hou*, Xuemei Lu*, Birth and death of Mx genes and the presence/absence of genes regulating Mx transcription are correlated with the diversity of anti-pathogenicity in vertebrate species, Molecular Genetics and Genomics, 2019 Feb;294(1):121-133.

5． Juan Li^# ,Lan Jiang^#, Chung-I Wu, Xuemei Lu*, Shu Fang*, Chau-Ti Ting*, Small Segmental Duplications in Drosophila-High Rate of Emergence and Elimination. Genome Biology and Evolution, 2019 Feb 1;11(2):486-496.

6． Xue Bai^#, Zhenzhen Liu^#, Xiaojian Shao, Di Wang, Encheng Dong, Yan Wang, Chung-I Wu, Yunfei Yuan, Xuemei Lu*, Chunyan Li*.The heterogeneity of plasma miRNA profiles in hepatocellular carcinoma patients and the exploration of diagnostic circulating miRNAs for hepatocellular carcinoma.PLoS One, 2019 Feb 5;14(2):e0211581.

7． Sixue Liu^#, Zuyu Yang^#, Guanghao Li^#, Chunyan Li, Yanting Luo, Qiang Gong, Xin Wu, Tao Li, Zhiqian Zhang, Baocai Xing, Xiaolan Xu*, Xuemei Lu*.Multi-omics Analysis of Primary Cell Culture Models Reveals Genetic and Epigenetic Basis of Intratumoral Phenotypic Diversity. Genomics Proteomics Bioinformatics, 2019 Dec;17(6):576-589.

2018:

1． Wen Ye^#, Shaoping Ling^#, Ran-Yi Liu^#, Zhi-Zhong Pan, Gaoyuan Wang, Shijuan Gao, Jiangxue Wu,Lihua Cao, Lili Dong, Yingchang Li, Yi Zhou, Wuying Du, Xiangqi Meng, Jinna Chen, Xinyuan Guan,Yulong He, Changchuan Pan, Xf Steven Zheng, Xuemei Lu*, Shuai Chen*, Wenlin Huang*.Exome sequencing reveals the genetic landscape and frequent inactivation of PCDHB3 in Chinese rectal cancers. Journal of Pathology, 2018 Jun;245(2):222-234.

2． Yanting Luo^#, Jianlin He^#, Xiguang Xu, Ming-An Sun, Xiaowei Wu, Xuemei Lu*, Hehuang Xie*. Integrative single-cell omics analyses reveal epigenetic heterogeneity in mouse embryonic stem cells.PLoS Comput Biol, 2018 Mar 21;14(3):e1006034.

3． Fuqiang Ma, Pei Lin, Qingjian Chen, Xuemei Lu, Yong E Zhang*, Chung-I Wu*, Direct measurement of pervasive weak repression by microRNAs and their role at the network level. BMC Genomics,2018 May 15;19(1):362.

2017:

1． Zuyu Yang^#, Mingming Jia^#, Guojing Liu, Huaining Hao, Li Chen, Guanghao Li, Sixue Liu, Yawei Li, Chung-I Wu, Xuemei Lu*, Shengdian Wang*. Genomic sequencing identifies a few mutations driving the independent origin of primary liver tumors in a chronic hepatitis murine model. PLoS One, 2017 Nov 8;12(11):e0187551.

2． Jin Xu^#, Xinxin Peng^#, Yuxin Chen^#, Yuezheng Zhang, Qin Ma ,Liang Liang, Ava C Carter, Xuemei Lu*, Chung-I Wu*. Free-living human cells reconfigure their chromosomes in the evolution back to uni-cellularit. Elife, 2017 Dec 18;6:e28070.

3． Chunyan Li^#, Yali Hou^#, Jin Xu^#, Aiqun Zhang, Zhenzhen Liu, Furong Qi, Zuyu Yang, Ke Chen, Sixue Liu, Huanwei Huang, Qianfei Wang, Jiahong Dong, Chung-I Wu, Xuemei Lu*. A Direct Test of Selection in Cell Populations Using the Diversity in Gene Expression within Tumors. Molecular Biology and Evolution, 2017 Jul 1;34(7):1730-1742.

4． You-Yu Lin, Chia-Hung Hsieh, Jiun-Hong Chen, Xuemei Lu, Jia-Horng Kao, Pei-Jer Chen, Ding-Shinn Chen*, Hurng-Yi Wang*. De novo assembly of highly polymorphic metagenomic data using in situ generated reference sequences and a novel BLAST-based assembly pipeline. BMC Bioinformatics, 2017 Apr 26;18(1):223.

5． Kaile Wang, Shujuan Lai, Xiaoxu Yang, Tianqi Zhu, Xuemei Lu, Chung-I Wu*, Jue Ruan*. Ultrasensitive and high-efficiency screen of de novo low-frequency mutations by o2n-seq. Nature Communications, 2017 May 22;8:15335.

2016:

1． Chung-I Wu*, Hurng-Yi Wang, Shaoping Ling, Xuemei Lu*. The Ecology and Evolution of Cancer: The Ultra-Microevolutionary Process. Annual Review of Genetics, 2016 Nov 23;50:347-369.

2． Xu Shen, Xue Bai, Jin Xu, Min Zhou, Haipin Xu, Qinghua Nie, Xuemei Lu*, Xiquan Zhang*. Transcriptome sequencing reveals genetic mechanisms underlying the transition between the laying and brooding phases and gene expression changes associated with divergent reproductive phenotypes in chickens. Molecular Biology Reports, 2016 Sep;43(9):977-89.

3． Kaile Wang^#, Xiaolu Ma^#, Xue Zhang, Dafei Wu, Chenyi Sun, Yazhou Sun,Xuemei Lu, Chung-I Wu*, Caixia Guo*, Jue Ruan*. Using ultra-sensitive next generation sequencing to dissect DNA damage-induced mutagenesis. Scientific Reports, 2016 Apr 28;6:25310.

4． Kaile Wang, Qin Ma, Lan Jiang, Shujuan Lai, Xuemei Lu, Yali Hou*, Chung-I Wu*, Jue Ruan*. Ultra-precise detection of mutations by droplet-based amplification of circularized DNA. BMC Genomics. 2016 Mar 9;17:214.

5． Shaojun Liu^#, Jing Luo^#, Jing Chai^#, Li Ren^#, Yi Zhou^#, Feng Huang^#, Xiaochuan Liu^#, Yubao Chen, Chun Zhang, Min Tao, Bin Lu, Wei Zhou, Guoliang Lin, Chao Mai, Shuo Yuan, Jun Wang, Tao Li, Qinbo Qin, Hao Feng, Kaikun Luo, Jun Xiao, Huan Zhong, Rurong Zhao, Wei Duan, Zhenyan Song, Yanqin Wang, Jing Wang, Li Zhong, Lu Wang, Zhaoli Ding, Zhenglin Du, Xuemei Lu, Yun Gao, Robert W Murphy, Yun Liu*, Axel Meyer*, Ya-Ping Zhang*. Genomic incompatibilities in the diploid and tetraploid offspring of the goldfish x common carp cross. Proceedings of the National Academy of Sciences, 2016 Feb 2;113(5):1327-32.

2015:

1． Shaoping Ling^#, Zheng Hu^#, Zuyu Yang^#, Yang Fang^#, Yawei Li, Pei Lin, Ke Chen, Lili Dong, Lihua Cao, Yong Tao, Lingtong Hao, Qingjian Chen, Qiang Gong, Dafei Wu, Wenjie Li, Wenming Zhao, Xiuyun Tian, Chunyi Hao*, Eric A. Hungate, Daniel V. T. Catenacci, Richard R. Hudson, Wen-Hsiung Li*, Xuemei Lu*, Chung-I Wu*. Extremely high genetic diversity in a single tumor points to prevalence of non-Darwinian cell evolution.Proceedings of the National Academy of Sciences,2015 Nov 24;112(47):E6496-505.

2． Chunyan Li^#, Zhenzhen Liu^#, Fang Yang^#, Wensheng Liu, Di Wang, Encheng Dong, Yu Wang, Chung-I Wu, Xuemei Lu*. siRNAs with decreased off-target effect facilitate the identification of essential genes in cancer cells. Oncotarget, 2015 Aug 28;6(25):21603-13.

3． Guojing Liu^#, Rui Zhang^#, Jin Xu, Chung-I Wu*, Xuemei Lu*. Functional conservation of both CDS- and 3’UTR- located miRNA binding sites between species. Molecular Biology and Evolution, 2015 Dec;32(12):3276.

4． Han-Hsuan Chou^#, Wei-Hung Chien^#, Li-Ling Wu, Chi-Hung Cheng, Chen-Han Chung, Jau-Haw Horng, Yen-Hsuan Ni, Hong-Tai Tseng, Dafei Wu,Xuemei Lu, Hurng-Yi Wang*, Pei-Jer Chen, Ding-Shinn Chen*. Age-related immune clearance of hepatitis B virus infection requires the establishment of gut microbiota. Proceedings of the National Academy of Sciences, 2015 Feb 17;112(7):2175-80.

5． Youyu Lin^#, Chieh Liu^#, Wei-Hung Chien, Liling Wu, Yong Tao, Dafei Wu,Xuemei Lu, Chia-Hung Hsieh, Pei-Jer Chen, Hurng-Yi Wang*, Jia-Horng Kao*, Ding-Shinn Chen. New insights into the evolutionary rate of hepatitis B virus at different biological scales. Journal of Virology, 2015 Apr;89(7):3512-22.

2014:

1． Yanting Luo^#,Xuemei Lu*, Hehuang Xie*. Dynamic Alu Methylation during Normal Development, Aging, and Tumorigenesis. Biomed Research International, 2014;2014:784706.

2． Xiaojian Shao^#, Cuiyun Zhang, Ming-An Sun, Xuemei Lu*, Hehuang Xie*. Deciphering the Heterogeneity in DNA Methylation Patterns during Stem Cell Differentiation and Reprogramming. BMC Genomics, 2014 Nov 18;15(1):978.

3． Lei Zhao^#, Ming-an Sun^#, Zejuan Li^#, Xue Bai, Miao Yu, Min Wang, Liji Liang, Xiaojian Shao, Stephen Arnovitz, Qianfei Wang, Chuan He, Xuemei Lu*, Jianjun Chen*, Hehuang Xie*. The dynamics of DNA methylation fidelity during mouse embryonic stem cell self-renewal and differentiation. Genome Research, 2014 Aug;24(8):1296-307.

4． Xiaogang Cui^#, Yali Hou^#, Shaohua Yang, Yan Xie, Shengli Zhang, Yuan Zhang, Qin Zhang,Xuemei Lu, George E Liu, Dongxiao Sun*. Transcriptional profiling of mammary gland in Holstein cows with extremely different milk protein and fat percentage using RNA sequencing. BMC Genomics. 2014 Mar 24;15:226.

2013:

1． Jue Ruan^#, Lan Jiang^#, Zechen Chong^#, Qiang Gong^#, Heng Li, Chunyan Li, Yong Tao, Caihong Zheng, Weiwei Zhai, David Turissini, Charles H Cannon, Xuemei Lu*, Chung-I Wu*. Pseudo-Sanger sequencing: massively parallel production of long and near error-free reads using NGS technology. BMC Genomics, 2013 Oct 17;14(1):711.

2． Jin Xu^#, Rui Zhang^#, Yang Shen, Guojing Liu,Xuemei Lu, Chung-I Wu*. The evolution of evolvability in microRNA target sites in vertebrates. Genome Research, 2013 Nov;23(11):1810-6.

3． Guodong Wang^#, Weiwei Zhai^#, Hechuan Yang, Ruoxi Fan, Xue Cao, Li Zhong, Lu Wang, Fei Liu, Hong Wu, Luguang Cheng, Andrei D Poyarkov, Nikolai A Poyarkov Jr, Shusheng Tang, Wenming Zhao, Yun Gao, Xuemei Lu, David M Irwin, Peter Savolainen, Chung-I Wu*, Ya-ping Zhang*. The genomics of selection in dogs and the parallel evolution between dogs and humans. Nature Communications, 2013;4:1860.

4． Yali Hou^#, Yachun Wang^#, Xuemei Lu^#, Xu Zhang, Qian Zhao, Rory J Todhunter*, Zhiwu Zhang*. Monitoring Hip and Elbow Dysplasia Achieved Modest Genetic Improvement of 74 Dog Breeds over 40 Years in USA. PLoS One, 2013 Oct 4;8(10):e76390.

5． Qiang Gong, Yong Tao, Jian-Rong Yang, Jun Cai, Yunfei Yuan, Jue Ruan, Jin Yang, Hailiang Liu, Wanghua Li, Xuemei Lu, Shi-Mei Zhuang, San Ming Wang, Chung-I Wu*. Identification of medium-sized genomic deletions with low coverage, mate-paired restricted tags. BMC Genomics, 2013 Jan 24;14:51.

6． Hongbo Fang^#, Linghu Nie^#, Zhenfen Chi, Jing Liu, Dan Guo, Xuemei Lu, Tom K Hei, Adayabalam S Balajee*, Yongliang Zhao*. RecQL4 helicase amplification is involved in human breast tumorigenesis. PLoS One, 2013 Jul 22;8(7):e69600.

7． Zechen Chong^#, Weiwei Zhai^#, Chunyan Li, Min Gao, Qiang Gong, Jue Ruan, Juan Li, Lan Jiang, Xuemei Lu, Eric Hungate, Chung-I Wu*. The Evolution of Small Insertions and Deletions in the Coding Genes of Drosophila melanogaster. Molecular Biology and Evolution, 2013 Dec;30(12):2699-708.

2011:

1． Yong Tao^#, Jue Ruan^#, Shiou-Hwei Yeh^#, Xuemei Lu^#, Yu Wang^#, Weiwei Zhai^#, Jun Cai^#, Shaoping Ling, Qiang Gong, Zechen Chong, Zhengzhong Qu, Qianqian Li, Jiang Liu, Jin Yang, Caihong Zheng, Changqing Zeng, Hurng-Yi Wang, Jing Zhang, Sheng-Han Wang, Lingtong Hao, Lili Dong, Wenjie Li, Min Sun, Wei Zou, Caixia Yu, Chaohua Li, Guojing Liu, Lan Jiang, Jin Xu, Huanwei Huang, Chunyan Li, Shuangli Mi, Bing Zhang, Baoxian Chen, Wenming Zhao, Songnian Hu, Shi-Mei Zhuang, Yang Shen, Suhua Shi, Christopher Brown, Kevin P.White, Ding-Shinn Chen*, Pei-Jer Chen, Chung-I Wu*.Rapid growth of a hepatocellular carcinoma and the driving mutations revealed by cell-population genetic analysis of whole-genome data, Proceedings of the National Academy of Sciences, 2011 Jul 19;108(29): 12042-7.

2． Xuemei Lu^#, Chung-I Wu*. Sex, sex chromosomes and gene expression. BMC Biology, 2011;9:30-32.

3． Renchao Zhou^#, Shaoping Ling^#, Wenming Zhao^#, Naoki Osada, Sufang Chen, Meng Zhang, Ziwen He, Hua Bao, Cairong Zhong, Bing Zhang, Xuemei Lu, David Turissini, Norman C Duke, Jian Lu, Suhua Shi*, Chung-I Wu*. Population genetics in nonmodel organisms: II. natural selection in marginal habitats revealed by deep sequencing on dual platforms. Molecular Biology and Evolution,2011 Oct;28(10):2833-42.

4． Ziwen He^#, Weiwei Zhai^#, Haijun Wen^#, Tian Tang, Yu Wang, Xuemei Lu, Anthony J Greenberg, Richard R Hudson, Chung-I Wu*, Suhua Shi*. Two evolutionary histories in the genome of rice: the roles of domestication genes. PLoS genetics, 2011 Jun;7(6):e1002100.

2010:

1． Xuemei Lu^#, Joshua A. Shapiro^#, Chau-Ti Ting, Yan Li, Chunyan Li, Jin Xu, Huanwei Huang, Ya-Jen Cheng, Anthony J. Greenberg, Shou-Hsien Li, Mao-Lien Wu, Yang Shen, Chung-I Wu*. Genome-wide misexpression of x-linked versus autosomal genes associated with hybrid male sterility. Genome Research, 2010 Aug;20(8):1097-102.

2． Yan Li^#, Liqing Zhang^#, Dexiang Zhang, Xiquan Zhang, Xuemei Lu*. Faster evolution of z-linked duplicate genes in chicken. Journal of Genetics and Genomics, 2010 Oct;37(10):695-702.

2009:

1． Hua Bao, Yuanyan Xiong, Hui Guo, Renchao Zhou,Xuemei Lu, Zhen Yang, Yang Zhong, Suhua Shi*. MapNext: a software tool for spliced and unspliced alignments and SNP detection of short sequence reads. BMC Genomics, 2009 Dec 3;10 Suppl 3(Suppl 3):S13.

2． Hua Bao^#*, Hui Guo^#, Jinwei Wang, Renchao Zhou, Xuemei Lu, Suhua Shi*. MapView: visualization of short reads alignment on a desktop computer. Bioinformatics, 2009 Jun 15;25(12):1554-5.

2008:

1． Hurng-Yi Wang^#*, Yonggui Fu^#, Mary Sara McPeek,Xuemei Lu, Sergey Nuzhdin, Anlong Xu, Jian Lu, Mao-Lien Wu, Chung-I Wu*.  Complex genetic interactions underlying expression differences between Drosophila races: analysis of chromosome substitutions. Proceedings of the National Academy of Sciences, 2008 Apr 29;105(17):6362-7.

2005:

1． Sanggyu Lee, Jingyue Bao, Guolin Zhou, Joshua Shapiro, Jinhua Xu, Run Zhang Shi, Xuemei Lu, Terry Clark, Deborah Johnson, Yeong C Kim, Claudia Wing, Charles Tseng, Min Sun, Wei Lin, Jun Wang, Huanming Yang, Jian Wang, Wei Du, Chung-I Wu, Xiuqing Zhang, San Ming Wang*. Detecting novel low-abundant transcripts in Drosophila. RNA,2005 Jun;11(6):939-46.

2002:

1． Huairong Luo, Xuemei Lu, Yonggang Yao, Nobuyuki Horie, Keiichi Takeishi, Lynn B Jorde, Yaping Zhang*. Length polymorphism of thymidylate synthase regulatory region in Chinese populations and evolution of the novel alleles. Biochemical genetics, 2002 Feb;40(1-2):41-51.

2． Xuemei Lu, Yunxin Fu, Yaping Zhang*. Evolution of Mitochondrial Cytochrome b Pseudogene in Genus Nycticebus. Molecular Biology and Evolution, 2002 Dec;19(12):2337-41.

2001:

1． Peng Shi^#, Xuemei Lu, Huairong Luo, Jin-Gong Xiang-Yu, Yaping Zhang*. Melanocortin-1 receptor gene variants in four Chinese ethnic populations. Cell Research, 2001 Mar;11(1):81-4.

2． Jiexia Quan, Xue-mei Lu, Zhimeng Zhuang, Jixun Dai, Jingyao Deng, Yaping Zhang*. Low genetic variation of Penaeus chinensis as revealed by mitochondrial COI and 16S rRNA gene sequences. Biochemical genetics, 2001 Aug;39(7-8):279-84.

2000:

1． Yong-Gang Yao^#, Xuemei Lu, Huai-Rong Luo, Wen-Hsiung Li, Ya-Ping Zhang. Gene admixture in the Silk Road region of China: Evidence from mtDNA and melanocortin 1 receptor polymorphism. Genes & Genetic Systems, 2000 Aug;75(4):173-8.

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